Variant report

Variant	rs12317105
Chromosome Location	chr12:30002190-30002191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11050473	0.82[AFR][1000 genomes]
rs11050474	0.82[AFR][1000 genomes]
rs11050475	0.82[AFR][1000 genomes]
rs11050476	0.82[AFR][1000 genomes]
rs11050477	0.82[AFR][1000 genomes]
rs11050478	0.82[AFR][1000 genomes]
rs11050480	0.82[AFR][1000 genomes]
rs11050481	0.82[AFR][1000 genomes]
rs11050484	0.82[AFR][1000 genomes]
rs11050485	0.82[AFR][1000 genomes]
rs11050486	0.82[AFR][1000 genomes]
rs11050487	0.82[AFR][1000 genomes]
rs11050491	0.82[AFR][1000 genomes]
rs11050492	0.82[AFR][1000 genomes]
rs11050493	0.82[AFR][1000 genomes]
rs11050494	0.82[AFR][1000 genomes]
rs12298049	0.82[AFR][1000 genomes]
rs12300211	0.82[AFR][1000 genomes]
rs12304166	0.82[AFR][1000 genomes]
rs12304207	0.82[AFR][1000 genomes]
rs12304335	0.82[AFR][1000 genomes]
rs12307862	0.82[AFR][1000 genomes]
rs12315716	0.82[AFR][1000 genomes]
rs12317098	0.82[AFR][1000 genomes]
rs12317199	0.82[AFR][1000 genomes]
rs12317899	0.82[AFR][1000 genomes]
rs12318071	0.82[AFR][1000 genomes]
rs12318077	0.82[AFR][1000 genomes]
rs12320006	0.82[AFR][1000 genomes]
rs12320007	0.82[AFR][1000 genomes]
rs12321517	0.82[AFR][1000 genomes]
rs12321611	0.82[AFR][1000 genomes]
rs13313229	0.82[AFR][1000 genomes]
rs13313230	0.82[AFR][1000 genomes]
rs13313236	0.82[AFR][1000 genomes]
rs1438510	0.82[AFR][1000 genomes]
rs1438511	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv469191	chr12:29939628-30098770	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv557958	chr12:29939628-30098770	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv526146	chr12:29989292-30112823	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv557975	chr12:30000388-30022105	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29996200-30003000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links