Variant report
| Variant | rs12317148 |
|---|---|
| Chromosome Location | chr12:4287339-4287340 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11063017 | 1.00[EUR][1000 genomes] |
| rs11063033 | 1.00[EUR][1000 genomes] |
| rs11063034 | 1.00[EUR][1000 genomes] |
| rs11063065 | 1.00[EUR][1000 genomes] |
| rs11063066 | 1.00[EUR][1000 genomes] |
| rs11835600 | 1.00[EUR][1000 genomes] |
| rs12298350 | 1.00[EUR][1000 genomes] |
| rs12298481 | 1.00[EUR][1000 genomes] |
| rs12301232 | 1.00[EUR][1000 genomes] |
| rs12302183 | 1.00[EUR][1000 genomes] |
| rs12306960 | 1.00[EUR][1000 genomes] |
| rs12307582 | 1.00[EUR][1000 genomes] |
| rs12309433 | 1.00[EUR][1000 genomes] |
| rs12310230 | 1.00[EUR][1000 genomes] |
| rs12310388 | 1.00[EUR][1000 genomes] |
| rs12314722 | 1.00[EUR][1000 genomes] |
| rs12317697 | 1.00[EUR][1000 genomes] |
| rs12318331 | 1.00[EUR][1000 genomes] |
| rs12319140 | 1.00[EUR][1000 genomes] |
| rs12423695 | 1.00[EUR][1000 genomes] |
| rs2534781 | 1.00[EUR][1000 genomes] |
| rs2540121 | 1.00[EUR][1000 genomes] |
| rs2540124 | 1.00[EUR][1000 genomes] |
| rs2540125 | 1.00[EUR][1000 genomes] |
| rs2540126 | 1.00[EUR][1000 genomes] |
| rs2540127 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530520 | chr12:3726841-4601757 | Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050474 | chr12:4226760-4389238 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:4286400-4287600 | Enhancers | GM12878-XiMat | blood |
| 2 | chr12:4287200-4288600 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
