Variant report

Variant	rs12319600
Chromosome Location	chr12:29366345-29366346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11050102	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11050109	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11050127	0.83[AFR][1000 genomes]
rs11050130	0.83[AFR][1000 genomes]
rs11050138	1.00[CEU][hapmap]
rs11834972	1.00[CEU][hapmap]
rs12304835	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12313631	1.00[CEU][hapmap]
rs73071996	0.83[AFR][1000 genomes]
rs73073756	0.83[AFR][1000 genomes]
rs73073757	0.83[AFR][1000 genomes]
rs73073782	0.83[AFR][1000 genomes]
rs73073797	0.83[AFR][1000 genomes]
rs73073798	0.83[AFR][1000 genomes]
rs7966961	1.00[CEU][hapmap]
rs7980369	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29359200-29366400	Enhancers	Fetal Intestine Large	intestine
2	chr12:29360400-29381000	Weak transcription	HUVEC	blood vessel
3	chr12:29362000-29368800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr12:29362600-29369800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:29363600-29369000	Weak transcription	Dnd41	blood
6	chr12:29363800-29377800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:29364400-29366400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:29364600-29366400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:29365200-29366600	Enhancers	Fetal Intestine Small	intestine
10	chr12:29365200-29366600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr12:29365400-29366400	Enhancers	Duodenum Mucosa	Duodenum
12	chr12:29365400-29366800	Enhancers	Placenta	Placenta
13	chr12:29365600-29366400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:29365600-29368800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:29365600-29369400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:29365600-29370000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr12:29365600-29370200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:29365600-29378600	Weak transcription	Small Intestine	intestine
19	chr12:29365800-29367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:29366000-29369800	Weak transcription	Adipose Nuclei	Adipose
21	chr12:29366000-29373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:29366200-29369400	Weak transcription	NHDF-Ad	bronchial
23	chr12:29366200-29393200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links