Variant report

Variant	rs12323613
Chromosome Location	chr14:64959011-64959012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64958246..64960870-chr14:64967867..64972086,4	K562	blood:
2	chr14:64957408..64961833-chr14:64968982..64972745,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10148266	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2230491	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12323613	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
6	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
7	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:64953000-64960200	Weak transcription	K562	blood
9	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:64953600-64959200	Strong transcription	Fetal Stomach	stomach
11	chr14:64953600-64959600	Strong transcription	Primary T cells from cord blood	blood
12	chr14:64953600-64959800	Strong transcription	GM12878-XiMat	blood
13	chr14:64954000-64959200	Strong transcription	Fetal Intestine Small	intestine
14	chr14:64954600-64962000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:64954600-64966600	Weak transcription	HepG2	liver
16	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
19	chr14:64954600-64968400	Weak transcription	Gastric	stomach
20	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
21	chr14:64954800-64960600	Weak transcription	Ovary	ovary
22	chr14:64954800-64962000	Weak transcription	Aorta	Aorta
23	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
24	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
28	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
32	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:64955000-64961800	Weak transcription	Brain Angular Gyrus	brain
34	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
36	chr14:64955200-64959600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:64955200-64961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:64955200-64963600	Weak transcription	NH-A	brain
39	chr14:64955200-64964600	Weak transcription	A549	lung
40	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
41	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
44	chr14:64955400-64959400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr14:64955400-64961800	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
50	chr14:64955600-64960400	Weak transcription	Brain Anterior Caudate	brain

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