Variant report

Variant	rs12324626
Chromosome Location	chr15:78030753-78030754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78021356..78025369-chr15:78027266..78032240,6	K562	blood:
2	chr15:78022100..78024937-chr15:78029389..78030939,2	MCF-7	breast:
3	chr15:78029860..78033858-chr15:78038839..78041859,3	K562	blood:
4	chr15:78025745..78027955-chr15:78030465..78032674,2	K562	blood:
5	chr15:78029999..78032267-chr15:78076792..78079270,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12324894	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906694	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28457682	0.94[ASN][1000 genomes]
rs28558809	0.94[ASN][1000 genomes]
rs28708729	0.82[ASN][1000 genomes]
rs34393364	0.82[ASN][1000 genomes]
rs34675801	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35042073	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35699564	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35939880	0.82[ASN][1000 genomes]
rs4275819	0.82[ASN][1000 genomes]
rs4570803	0.82[ASN][1000 genomes]
rs4617826	0.82[ASN][1000 genomes]
rs66577118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67185399	0.94[ASN][1000 genomes]
rs7162414	0.82[ASN][1000 genomes]
rs7162468	0.82[ASN][1000 genomes]
rs8024882	0.82[ASN][1000 genomes]
rs8028004	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028987	0.82[ASN][1000 genomes]
rs8029954	0.82[ASN][1000 genomes]
rs8030564	0.82[ASN][1000 genomes]
rs8030681	0.82[ASN][1000 genomes]
rs8031251	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv570150	chr15:78004743-78038124	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904420	chr15:78025267-78078903	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78013000-78031200	Weak transcription	Fetal Brain Female	brain
2	chr15:78014000-78031000	Weak transcription	Spleen	Spleen
3	chr15:78029800-78031000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:78029800-78031200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr15:78029800-78031400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:78029800-78031600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78029800-78032800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:78030000-78030800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr15:78030000-78031200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr15:78030000-78031200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr15:78030000-78031200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:78030000-78031600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr15:78030200-78033800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:78030400-78031000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:78030400-78032000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:78030400-78032800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:78030600-78031200	Enhancers	Duodenum Mucosa	Duodenum
18	chr15:78030600-78033400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links