Variant report

Variant	rs12324632
Chromosome Location	chr15:77767676-77767677
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77767204-77768183	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr15:77767301-77768138	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
HMG20A	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11856084	0.87[YRI][hapmap]
rs12324795	0.87[YRI][hapmap]
rs17471480	0.87[YRI][hapmap]
rs74025200	0.83[AFR][1000 genomes]
rs74026921	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77748400-77770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:77749000-77770400	Weak transcription	Spleen	Spleen
3	chr15:77750000-77770400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:77750400-77777800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr15:77750600-77777800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:77750600-77779200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77750600-77779600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:77750800-77768200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:77750800-77768200	Strong transcription	Liver	Liver
10	chr15:77750800-77768200	Strong transcription	Fetal Intestine Large	intestine
11	chr15:77750800-77768400	Strong transcription	Primary T cells from cord blood	blood
12	chr15:77750800-77780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:77751000-77768600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:77751000-77770600	Weak transcription	Gastric	stomach
15	chr15:77751000-77770600	Weak transcription	Right Atrium	heart
16	chr15:77751000-77773600	Weak transcription	Stomach Mucosa	stomach
17	chr15:77753400-77777600	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr15:77754000-77767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:77755000-77768600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:77755200-77768000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:77755200-77775600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:77755400-77768200	Strong transcription	Primary B cells from cord blood	blood
23	chr15:77755400-77777800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:77755600-77768600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:77755600-77770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:77755800-77767800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:77756200-77778400	Strong transcription	Fetal Thymus	thymus
28	chr15:77756800-77775800	Weak transcription	Pancreas	Pancrea
29	chr15:77757200-77770400	Weak transcription	Esophagus	oesophagus
30	chr15:77757200-77771200	Weak transcription	Colonic Mucosa	Colon
31	chr15:77757200-77774200	Weak transcription	NHLF	lung
32	chr15:77759200-77771600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:77759200-77776000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:77759400-77770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:77759600-77769400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:77760200-77767800	Weak transcription	Fetal Brain Female	brain
37	chr15:77760200-77769600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:77760400-77770400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:77761600-77768400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:77761600-77775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:77762000-77769400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:77762000-77775800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:77762400-77768200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:77762400-77770200	Weak transcription	Fetal Stomach	stomach
45	chr15:77762400-77770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:77762400-77770600	Weak transcription	Fetal Intestine Small	intestine
47	chr15:77763000-77768400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:77764000-77770000	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:77764200-77767800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:77764200-77770200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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