Variant report

Variant	rs12324876
Chromosome Location	chr15:100164106-100164107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10468175	0.82[AMR][1000 genomes]
rs11247112	0.82[ASN][1000 genomes]
rs11247116	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12438623	0.82[AMR][1000 genomes]
rs12591308	0.87[ASN][1000 genomes]
rs1991921	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2012129	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs325405	0.83[ASN][1000 genomes]
rs4564541	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4965260	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62040140	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62040141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62040142	0.86[AMR][1000 genomes]
rs7162940	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7172418	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7181542	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8029326	0.82[AMR][1000 genomes]
rs8037206	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
2	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
3	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
4	chr15:100155400-100164200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:100155400-100168400	Weak transcription	Stomach Mucosa	stomach
6	chr15:100155400-100170800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:100155400-100180800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:100155600-100164200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:100156000-100164200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:100156000-100170800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:100156000-100173200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:100158000-100166000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:100158000-100171000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:100158200-100164800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:100158600-100165600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:100159200-100166000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:100159400-100166400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:100159400-100174600	Weak transcription	Brain Angular Gyrus	brain
20	chr15:100159600-100164400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:100159600-100164600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:100159600-100166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:100159600-100167200	Weak transcription	Left Ventricle	heart
24	chr15:100159600-100167200	Weak transcription	Pancreas	Pancrea
25	chr15:100159600-100169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:100159600-100170800	Weak transcription	Right Ventricle	heart
27	chr15:100159600-100174400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:100159600-100180600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:100159600-100181200	Weak transcription	Lung	lung
30	chr15:100159600-100200400	Weak transcription	Aorta	Aorta
31	chr15:100159800-100180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:100160000-100164600	Weak transcription	Hela-S3	cervix
33	chr15:100160000-100167800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:100160000-100170400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:100160200-100168600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:100160200-100171000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:100160600-100171200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:100160800-100165600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:100160800-100167200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:100160800-100167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:100160800-100168200	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:100160800-100170800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:100160800-100171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:100160800-100172600	Weak transcription	Fetal Lung	lung
45	chr15:100160800-100215200	Weak transcription	Ovary	ovary
46	chr15:100161000-100167800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr15:100161000-100168800	Weak transcription	Adipose Nuclei	Adipose
48	chr15:100161400-100166200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:100161400-100167200	Weak transcription	Psoas Muscle	Psoas
50	chr15:100161400-100169000	Weak transcription	Primary monocytes fromperipheralblood	blood

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