Variant report

Variant	rs12325848
Chromosome Location	chr17:62956375-62956376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:62955405..62958642-chr17:63051085..63052927,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1967988	1.00[YRI][hapmap]
rs61735891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056492	chr17:62649313-62974185	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	75 gene(s)	inside rSNPs	diseases
2	nsv1057123	chr17:62649313-62974185	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	75 gene(s)	inside rSNPs	diseases
3	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv833518	chr17:62811942-62982460	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv908688	chr17:62906437-62970615	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv908689	chr17:62937739-62986362	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:62916600-62957600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:62932800-62957600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:62934000-62958200	Weak transcription	Hela-S3	cervix
4	chr17:62935200-62961800	Weak transcription	Ovary	ovary
5	chr17:62935400-62961800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr17:62936400-62957600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:62948800-62957800	Weak transcription	Fetal Stomach	stomach
8	chr17:62952800-62957600	Weak transcription	GM12878-XiMat	blood
9	chr17:62955200-62956600	Enhancers	Liver	Liver
10	chr17:62955400-62956600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:62955400-62956600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:62955400-62956600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr17:62955400-62956600	Enhancers	HepG2	liver
14	chr17:62955400-62957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:62955800-62956400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:62955800-62956600	Enhancers	HMEC	breast
17	chr17:62955800-62957600	Weak transcription	HSMMtube	muscle
18	chr17:62955800-62961400	Weak transcription	HSMM	muscle
19	chr17:62956000-62957600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:62956000-62957800	Weak transcription	NH-A	brain
21	chr17:62956000-62958000	Weak transcription	Osteobl	bone
22	chr17:62956200-62957600	Weak transcription	A549	lung
23	chr17:62956200-62958200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr17:62956200-62958400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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