Variant report

Variant	rs12326871
Chromosome Location	chr18:30132707-30132708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16963581	0.81[AFR][1000 genomes]
rs34379307	1.00[ASN][1000 genomes]
rs58245863	0.83[AFR][1000 genomes]
rs72943195	1.00[ASN][1000 genomes]
rs8083035	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs8083282	0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs9962948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973067	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30122600-30133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:30128800-30133000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:30129000-30133600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:30129200-30132800	Weak transcription	Fetal Intestine Small	intestine
5	chr18:30131200-30132800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr18:30131200-30136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr18:30131400-30133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:30131400-30133200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:30131600-30136800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:30131800-30132800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr18:30131800-30132800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr18:30131800-30132800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr18:30131800-30132800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:30132000-30133000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:30132400-30132800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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