Variant report

Variant	rs12327868
Chromosome Location	chr19:42310791-42310792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11083640	1.00[AMR][1000 genomes]
rs11878330	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11878687	1.00[EUR][1000 genomes]
rs11879132	1.00[AMR][1000 genomes]
rs11879519	1.00[EUR][1000 genomes]
rs11879631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880116	1.00[AMR][1000 genomes]
rs11880522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11881984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61761235	1.00[AMR][1000 genomes]
rs73932094	1.00[EUR][1000 genomes]
rs8103772	1.00[EUR][1000 genomes]
rs8112569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3351362	chr19:42307636-42311347	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv960846	chr19:42310504-42312100	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42304800-42316800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr19:42307000-42313600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr19:42307000-42314600	Weak transcription	Fetal Thymus	thymus
4	chr19:42308800-42313000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr19:42308800-42314400	Weak transcription	GM12878-XiMat	blood
6	chr19:42309000-42312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:42309200-42312200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr19:42310000-42311400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr19:42310000-42312000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:42310200-42311400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:42310200-42311800	Weak transcription	Primary B cells from cord blood	blood
12	chr19:42310600-42311400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
13	chr19:42310600-42317800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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