Variant report

Variant	rs12327891
Chromosome Location	chr19:51898561-51898562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:60)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:60 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr19:51897045-51899150	GM12878	blood:	n/a	n/a
2	POLR2A	chr19:51898534-51899055	GM12892	blood:	n/a	n/a
3	HEY1	chr19:51898497-51899010	K562	blood:	n/a	n/a
4	POLR2A	chr19:51898114-51898628	GM12878	blood:	n/a	n/a
5	PAX5	chr19:51898245-51898594	GM12878	blood:	n/a	n/a
6	POLR2A	chr19:51897618-51899052	GM12892	blood:	n/a	n/a
7	POLR2A	chr19:51897232-51899094	GM18951	blood:	n/a	n/a
8	CBX3	chr19:51898147-51899131	K562	blood:	n/a	n/a
9	POLR2A	chr19:51897183-51899102	GM15510	blood:	n/a	n/a
10	POLR2A	chr19:51897149-51899076	PBDE	blood:	n/a	n/a
11	RELA	chr19:51897064-51899026	GM18505	blood:	n/a	n/a
12	POLR2A	chr19:51898453-51899090	GM12891	blood:	n/a	n/a
13	POLR2A	chr19:51897026-51899114	GM12892	blood:	n/a	n/a
14	POLR2A	chr19:51897677-51899123	GM12878	blood:	n/a	n/a
15	RELA	chr19:51897107-51899124	GM15510	blood:	n/a	n/a
16	POLR2A	chr19:51897006-51899056	GM12892	blood:	n/a	n/a
17	NR2F2	chr19:51896994-51899136	K562	blood:	n/a	n/a
18	POLR2A	chr19:51897133-51899123	GM18505	blood:	n/a	n/a
19	POLR2A	chr19:51898517-51899069	K562	blood:	n/a	n/a
20	PAX5	chr19:51898514-51899084	GM12878	blood:	n/a	n/a
21	POLR2A	chr19:51897204-51899051	K562	blood:	n/a	n/a
22	POLR2A	chr19:51898385-51898897	HepG2	liver:	n/a	n/a
23	POLR2A	chr19:51897097-51899114	K562	blood:	n/a	n/a
24	POLR2A	chr19:51897183-51899109	GM18526	blood:	n/a	n/a
25	RELA	chr19:51897216-51899095	GM10847	blood:	n/a	n/a
26	POLR2A	chr19:51898495-51899124	GM12878	blood:	n/a	n/a
27	MAX	chr19:51897244-51899117	K562	blood:	n/a	chr19:51899006-51899015 chr19:51899007-51899014 chr19:51899006-51899016
28	PML	chr19:51898517-51899105	GM12878	blood:	n/a	n/a
29	POLR2A	chr19:51898550-51899096	HL-60	blood:	n/a	n/a
30	NFIC	chr19:51898520-51898991	GM12878	blood:	n/a	n/a
31	HEY1	chr19:51897610-51899099	K562	blood:	n/a	chr19:51899006-51899015
32	POLR2A	chr19:51898519-51899029	HCT-116	colon:	n/a	n/a
33	POLR2A	chr19:51897683-51899175	GM12878	blood:	n/a	n/a
34	POLR2A	chr19:51897108-51899095	K562	blood:	n/a	n/a
35	RELA	chr19:51898411-51899126	GM12878	blood:	n/a	n/a
36	PAX5	chr19:51898327-51899038	GM12878	blood:	n/a	n/a
37	POLR2A	chr19:51897154-51899132	GM19099	blood:	n/a	n/a
38	POLR2A	chr19:51896843-51899037	K562	blood:	n/a	n/a
39	POLR2A	chr19:51898524-51899106	HCT-116	colon:	n/a	n/a
40	ZNF384	chr19:51898249-51899161	K562	blood:	n/a	n/a
41	POLR2A	chr19:51897628-51899090	GM12891	blood:	n/a	n/a
42	UBTF	chr19:51897704-51898834	K562	blood:	n/a	n/a
43	TAF1	chr19:51898524-51899064	GM12878	blood:	n/a	n/a
44	CREB1	chr19:51898534-51899145	GM12878	blood:	n/a	n/a
45	RELA	chr19:51896983-51899067	GM12891	blood:	n/a	n/a
46	POLR2A	chr19:51898493-51899121	K562	blood:	n/a	n/a
47	POLR2A	chr19:51897011-51899154	GM12891	blood:	n/a	n/a
48	POLR2A	chr19:51898509-51899052	GM12891	blood:	n/a	n/a
49	POLR2A	chr19:51897076-51899166	GM12878	blood:	n/a	n/a
50	POLR2A	chr19:51898508-51899079	K562	blood:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:51897812..51899328-chr19:51901713..51903648,2	MCF-7	breast:
2	chr19:51869234..51872471-chr19:51897367..51899516,3	MCF-7	breast:
3	chr19:51897297..51899400-chr19:52095029..52099296,3	K562	blood:
4	chr19:51840838..51845657-chr19:51892354..51900411,18	K562	blood:
5	chr19:51897676..51900576-chr19:51905401..51907897,3	K562	blood:
6	chr19:51896400..51903695-chr19:51903717..51912186,11	K562	blood:
7	chr19:51829447..51832200-chr19:51897791..51899840,5	K562	blood:
8	chr19:51897857..51900350-chr19:51919819..51922051,2	K562	blood:
9	chr19:51847346..51848930-chr19:51897301..51899895,2	K562	blood:
10	chr19:51841257..51845442-chr19:51896216..51899567,12	K562	blood:
11	chr19:51867772..51875803-chr19:51892381..51899756,21	K562	blood:
12	chr19:51864453..51872845-chr19:51892428..51902096,29	K562	blood:
13	chr19:51889349..51894566-chr19:51895156..51899826,6	K562	blood:
14	chr19:51868903..51871265-chr19:51897328..51899243,2	MCF-7	breast:
15	chr19:51889722..51893942-chr19:51894149..51900029,8	K562	blood:

No data

Variant related genes	Relation type
C19orf84	TF binding region
ENSG00000105370	Chromatin interaction
ENSG00000105374	Chromatin interaction
ENSG00000186806	Chromatin interaction
ENSG00000167765	Chromatin interaction
ENSG00000267984	Chromatin interaction
ENSG00000269403	Chromatin interaction
ENSG00000160318	Chromatin interaction
ENSG00000105379	Chromatin interaction
ENSG00000262874	Chromatin interaction
ENSG00000269388	Chromatin interaction
ENSG00000268520	Chromatin interaction
ENSG00000267905	Chromatin interaction
ENSG00000142512	Chromatin interaction
ENSG00000268144	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73562123	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51896800-51898600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr19:51897000-51898600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:51897000-51898600	Active TSS	HSMM	muscle
4	chr19:51897000-51898800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr19:51897000-51898800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr19:51897000-51898800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr19:51897000-51898800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr19:51897000-51898800	Flanking Active TSS	Fetal Thymus	thymus
9	chr19:51897000-51899000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr19:51897000-51899000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr19:51897000-51899200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr19:51897200-51898600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:51897200-51898800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr19:51897400-51898800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr19:51897400-51898800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr19:51897600-51899000	Enhancers	Spleen	Spleen
17	chr19:51897800-51898600	Flanking Active TSS	Hela-S3	cervix
18	chr19:51897800-51898600	Flanking Active TSS	HepG2	liver
19	chr19:51897800-51898800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:51897800-51899000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr19:51897800-51899800	Flanking Active TSS	GM12878-XiMat	blood
22	chr19:51898000-51898600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr19:51898000-51898600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:51898000-51898800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr19:51898000-51899000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:51898000-51899000	Enhancers	Primary B cells from cord blood	blood
27	chr19:51898000-51899400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr19:51898200-51898600	Enhancers	Stomach Mucosa	stomach
29	chr19:51898200-51898600	Active TSS	NHEK	skin
30	chr19:51898200-51898800	Enhancers	Primary hematopoietic stem cells	blood
31	chr19:51898200-51899000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:51898200-51899200	Flanking Active TSS	Dnd41	blood
33	chr19:51898200-51899400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:51898200-51899600	Enhancers	Primary B cells from peripheral blood	blood
35	chr19:51898200-51900800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:51898400-51898600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr19:51898400-51898600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:51898400-51898600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr19:51898400-51898600	Active TSS	K562	blood
40	chr19:51898400-51898600	Enhancers	NHLF	lung
41	chr19:51898400-51898800	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr19:51898400-51898800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr19:51898400-51898800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr19:51898400-51898800	Enhancers	Duodenum Mucosa	Duodenum
45	chr19:51898400-51898800	Active TSS	A549	lung
46	chr19:51898400-51898800	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr19:51898400-51899000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr19:51898400-51899000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:51898400-51899000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:51898400-51899000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links