Variant report

Variant	rs12328488
Chromosome Location	chr2:181769434-181769435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10178400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10199087	1.00[EUR][1000 genomes]
rs4666954	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181767600-181771000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:181768800-181770000	Weak transcription	Fetal Lung	lung
3	chr2:181769200-181770800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:181769400-181769600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:181769400-181769600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:181769400-181769600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:181769400-181770800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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