Variant report

Variant	rs12329320
Chromosome Location	chr2:77721764-77721765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:77697026..77699297-chr2:77719458..77722284,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10177313	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10182084	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10183593	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10185975	0.83[CHB][hapmap]
rs10189992	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10206763	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11126609	0.84[CHB][hapmap]
rs11675925	0.84[EUR][1000 genomes]
rs11679943	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11690280	0.84[EUR][1000 genomes]
rs12328979	0.84[CHB][hapmap]
rs12621012	0.83[CHB][hapmap]
rs12713915	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs12713916	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13004227	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13027825	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs13029709	0.83[CHB][hapmap]
rs13418152	0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17594976	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1922812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2204914	0.83[EUR][1000 genomes]
rs2901851	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4309596	0.84[EUR][1000 genomes]
rs4542882	0.85[EUR][1000 genomes]
rs5007084	0.84[CHB][hapmap]
rs6729915	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6749867	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6761838	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7564840	0.84[CHB][hapmap]
rs7587183	0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874333	chr2:77315349-77798886	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv518504	chr2:77326832-78172786	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1004938	chr2:77347740-78186543	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535783	chr2:77347740-78186543	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv529904	chr2:77347741-78186542	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv997329	chr2:77354560-78176285	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv520560	chr2:77675884-77724557	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv874338	chr2:77683562-77747513	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv874339	chr2:77683562-77872197	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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