Variant report

Variant rs12329660
Chromosome Location chr21:47547858-47547859
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:47530800-47563600 Weak transcription Right Atrium heart
2 chr21:47531000-47548800 Strong transcription Duodenum Smooth Muscle Duodenum
3 chr21:47531800-47549400 Strong transcription Aorta Aorta
4 chr21:47531800-47549600 Strong transcription Colon Smooth Muscle Colon
5 chr21:47531800-47550000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
6 chr21:47532000-47549400 Strong transcription Colonic Mucosa Colon
7 chr21:47535000-47554800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr21:47535200-47548000 Strong transcription Fetal Stomach stomach
9 chr21:47535200-47548200 Strong transcription HUES6 Cell Line embryonic stem cell
10 chr21:47535200-47548200 Weak transcription Brain Germinal Matrix brain
11 chr21:47535200-47549400 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr21:47535200-47549600 Strong transcription Adipose Nuclei Adipose
13 chr21:47535200-47551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr21:47535200-47552000 Strong transcription Breast Myoepithelial Primary Cells Breast
15 chr21:47535200-47552000 Strong transcription NHLF lung
16 chr21:47535200-47552400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr21:47535200-47552800 Strong transcription Fetal Muscle Leg muscle
18 chr21:47535600-47549200 Weak transcription Fetal Brain Female brain
19 chr21:47535600-47551000 Strong transcription Fetal Intestine Small intestine
20 chr21:47537200-47548000 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr21:47538200-47563600 Weak transcription Brain Anterior Caudate brain
22 chr21:47539200-47549800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr21:47539200-47550400 Weak transcription Duodenum Mucosa Duodenum
24 chr21:47540200-47548200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr21:47541600-47548200 Strong transcription H9 Cell Line embryonic stem cell
26 chr21:47542400-47552000 Weak transcription HSMM muscle
27 chr21:47542600-47551200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr21:47542600-47551400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr21:47542600-47552400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr21:47542800-47550200 Strong transcription Muscle Satellite Cultured Cells --
31 chr21:47542800-47550600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr21:47542800-47552400 Strong transcription NHDF-Ad bronchial
33 chr21:47543600-47553800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr21:47544000-47548600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
35 chr21:47544000-47553400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
36 chr21:47544200-47553800 Strong transcription Osteobl bone
37 chr21:47544400-47548400 Genic enhancers Placenta Placenta
38 chr21:47544400-47550000 Strong transcription Placenta Amnion Placenta Amnion
39 chr21:47544600-47548000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr21:47544600-47549600 Strong transcription iPS-15b Cell Line embryonic stem cell
41 chr21:47544800-47549200 Strong transcription Lung lung
42 chr21:47545000-47549000 Strong transcription Spleen Spleen
43 chr21:47545000-47556200 Weak transcription HSMMtube muscle
44 chr21:47546000-47548000 Strong transcription Gastric stomach
45 chr21:47546000-47550800 Enhancers Fetal Heart heart
46 chr21:47546200-47556200 Weak transcription Fetal Lung lung
47 chr21:47546400-47551400 Weak transcription Rectal Smooth Muscle rectum
48 chr21:47546400-47552000 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr21:47546800-47548600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr21:47546800-47552000 Weak transcription Esophagus oesophagus

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