Variant report

Variant	rs12332385
Chromosome Location	chr5:127214344-127214345
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127213582..127214540-chr5:127536708..127537793,3	K562	blood:
2	chr5:127211793..127217903-chr5:127417278..127420388,8	MCF-7	breast:
3	chr5:127154107..127155724-chr5:127212443..127214983,2	MCF-7	breast:
4	chr5:127212385..127215145-chr5:127219355..127222619,3	MCF-7	breast:
5	chr5:127208944..127216752-chr5:127415805..127421659,21	MCF-7	breast:
6	chr5:127213714..127214536-chr5:127222122..127222836,2	K562	blood:
7	chr5:127213246..127215521-chr5:127308209..127310216,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245937	Chromatin interaction
ENSG00000064651	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10042555	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058856	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs111941	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs111942	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs122730	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs122731	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs122734	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12332194	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12332386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12332552	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421748	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421749	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421750	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421751	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs151853	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs151855	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151858	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151859	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1520247	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs173444	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs187381	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs193495	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2006195	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2108653	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2409033	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs245156	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs245158	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs245160	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs245167	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs245172	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245174	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs245175	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs245221	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs245237	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2544779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2544780	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2681512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2764766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127207800-127220800	Weak transcription	Brain Angular Gyrus	brain
2	chr5:127211600-127216800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:127211600-127220600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:127211800-127214400	Enhancers	A549	lung
5	chr5:127212000-127214400	Enhancers	Stomach Mucosa	stomach
6	chr5:127212200-127219600	Weak transcription	Small Intestine	intestine
7	chr5:127212400-127217200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:127212400-127217200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:127212400-127220200	Weak transcription	Psoas Muscle	Psoas
10	chr5:127212400-127220800	Weak transcription	Fetal Lung	lung
11	chr5:127212600-127218400	Weak transcription	Fetal Kidney	kidney
12	chr5:127213000-127214400	Enhancers	Fetal Intestine Large	intestine
13	chr5:127213000-127214400	Enhancers	Fetal Intestine Small	intestine
14	chr5:127213000-127214400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:127213600-127214400	Enhancers	Brain Substantia Nigra	brain
16	chr5:127213800-127214400	Enhancers	Left Ventricle	heart
17	chr5:127213800-127214400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr5:127213800-127214400	Enhancers	HUVEC	blood vessel
19	chr5:127213800-127218200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:127214000-127218400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:127214200-127214400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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