Variant report

Variant	rs12332871
Chromosome Location	chr6:110645780-110645781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13437572	1.00[AMR][1000 genomes]
rs9400367	1.00[AMR][1000 genomes]
rs9481046	1.00[AMR][1000 genomes]
rs9481049	1.00[AMR][1000 genomes]
rs9481051	1.00[AMR][1000 genomes]
rs9481060	1.00[AMR][1000 genomes]
rs9487326	1.00[AMR][1000 genomes]
rs9487330	1.00[AMR][1000 genomes]
rs9487332	1.00[AMR][1000 genomes]
rs9487362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110628200-110651200	Weak transcription	Gastric	stomach
2	chr6:110632400-110646200	Weak transcription	Pancreas	Pancrea
3	chr6:110637400-110646200	Weak transcription	Aorta	Aorta
4	chr6:110638800-110646600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:110640200-110647200	Enhancers	Fetal Brain Male	brain
6	chr6:110640200-110650800	Enhancers	Fetal Lung	lung
7	chr6:110640800-110646400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:110641000-110650800	Enhancers	Fetal Stomach	stomach
9	chr6:110641400-110650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:110642600-110648200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr6:110642800-110650800	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:110643000-110646200	Enhancers	Placenta	Placenta
13	chr6:110643200-110647600	Enhancers	Brain Germinal Matrix	brain
14	chr6:110643600-110650400	Enhancers	Fetal Kidney	kidney
15	chr6:110644000-110647400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:110644000-110647600	Enhancers	Fetal Intestine Small	intestine
17	chr6:110644200-110645800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:110644200-110646000	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:110644200-110646800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:110644200-110647000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:110644200-110648200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:110644200-110649800	Enhancers	Ovary	ovary
23	chr6:110644400-110646200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:110644400-110646200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:110644400-110646200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:110644400-110648200	Enhancers	Stomach Mucosa	stomach
27	chr6:110644400-110650400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:110644600-110648800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:110644600-110649000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:110644600-110650000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:110644600-110652600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:110644800-110647400	Enhancers	Fetal Intestine Large	intestine
33	chr6:110644800-110648400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:110644800-110649200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:110644800-110649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:110645000-110646200	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:110645000-110647200	Enhancers	Fetal Brain Female	brain
38	chr6:110645000-110649200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:110645000-110650800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:110645200-110646800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:110645200-110647200	Enhancers	Colonic Mucosa	Colon
42	chr6:110645200-110649000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:110645200-110649200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:110645200-110649200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:110645200-110650400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:110645400-110646800	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:110645400-110646800	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:110645400-110647000	Enhancers	Liver	Liver
49	chr6:110645400-110647200	Enhancers	Lung	lung
50	chr6:110645400-110647400	Weak transcription	Fetal Thymus	thymus

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