Variant report

Variant	rs12332931
Chromosome Location	chr6:144991464-144991465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12333182	1.00[AFR][1000 genomes]
rs9497033	0.85[AFR][1000 genomes]
rs9497038	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
2	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
3	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144982600-144996200	Weak transcription	HSMM	muscle
5	chr6:144982800-144992200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
7	chr6:144983000-144992600	Weak transcription	HSMMtube	muscle
8	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
9	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
12	chr6:144988600-144992400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:144988600-144995800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:144988800-144991600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:144989400-144992600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:144989400-144992800	Weak transcription	Left Ventricle	heart
17	chr6:144989800-144992800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:144990200-144995600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:144990800-144992200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr6:144991000-144996200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:144991200-144992000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links