Variant report

Variant	rs12335005
Chromosome Location	chr8:92217762-92217763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr8:92217537-92217839	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr8:92217523-92217815	H1-hESC	embryonic stem cell:	n/a	n/a
3	USF1	chr8:92217500-92217899	H1-hESC	embryonic stem cell:	n/a	n/a
4	USF1	chr8:92217542-92217851	ECC-1	luminal epithelium:	n/a	n/a

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4661-3p	chr8:92217759-92217780	MIMAT0019730

Variant related genes	Relation type
SLC26A7	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091375	1.00[YRI][hapmap]
rs10097740	1.00[YRI][hapmap]
rs10104677	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112281	0.91[YRI][hapmap]
rs10216509	1.00[ASW][hapmap];0.92[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap]
rs10956789	0.82[YRI][hapmap]
rs13328403	1.00[ASW][hapmap]
rs1375247	1.00[ASW][hapmap]
rs1900810	1.00[ASW][hapmap]
rs28498511	1.00[AMR][1000 genomes]
rs28765195	0.83[AFR][1000 genomes]
rs28819839	0.81[AFR][1000 genomes]
rs3964630	0.87[ASW][hapmap]
rs73303653	0.83[AFR][1000 genomes]
rs73305606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305623	1.00[AMR][1000 genomes]
rs7826163	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7833987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834012	1.00[ASW][hapmap]
rs7836000	0.84[ASW][hapmap];0.85[LWK][hapmap]
rs9969428	1.00[YRI][hapmap]
rs9987346	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2758623	chr8:91974499-92273724	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2759629	chr8:91974499-92273724	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv35058	chr8:92127463-92218776	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv982091	chr8:92203990-92240482	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92216400-92219400	Weak transcription	Placenta	Placenta
2	chr8:92216800-92217800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:92217200-92218000	Enhancers	Fetal Intestine Large	intestine

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