Variant report

Variant	rs12335913
Chromosome Location	chr9:78922972-78922973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10118444	1.00[EUR][1000 genomes]
rs10119312	1.00[EUR][1000 genomes]
rs11144824	1.00[EUR][1000 genomes]
rs12352057	1.00[EUR][1000 genomes]
rs28581509	1.00[EUR][1000 genomes]
rs28620970	1.00[EUR][1000 genomes]
rs7020764	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv508552	chr9:78864913-78956326	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv893477	chr9:78892526-78932928	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3337929	chr9:78917532-78923930	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3424074	chr9:78918332-78923180	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3481660	chr9:78918557-78923505	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3430512	chr9:78918782-78923080	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv435888	chr9:78919188-78924556	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv614695	chr9:78919851-78923257	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv614696	chr9:78920114-78923257	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78912400-78927800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:78913400-78935200	Weak transcription	Small Intestine	intestine
3	chr9:78916000-78925400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:78917400-78928000	Weak transcription	Colonic Mucosa	Colon
5	chr9:78917600-78923600	Weak transcription	Fetal Intestine Large	intestine
6	chr9:78918000-78923000	Weak transcription	Stomach Mucosa	stomach
7	chr9:78918800-78924000	Weak transcription	Fetal Intestine Small	intestine
8	chr9:78919000-78924800	Weak transcription	Placenta	Placenta
9	chr9:78922600-78925600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:78922600-78953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:78922800-78923400	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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