Variant report

Variant	rs1233603
Chromosome Location	chr6:28734031-28734032
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1233601	0.86[ASN][1000 genomes]
rs1233602	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233607	0.86[ASN][1000 genomes]
rs1233615	0.86[ASN][1000 genomes]
rs1233616	0.85[ASN][1000 genomes]
rs1233617	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28731800-28734400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28732000-28734600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
3	chr6:28732800-28734200	Weak transcription	K562	blood
4	chr6:28732800-28734400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr6:28733400-28734400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:28733600-28734200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:28733600-28734400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:28733800-28734200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:28733800-28734200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:28733800-28735000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr6:28734000-28734200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:28734000-28734400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:28734000-28734600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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