Variant report

Variant	rs12336524
Chromosome Location	chr9:97024694-97024695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96928568..96930309-chr9:97024360..97026072,2	K562	blood:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10114209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115657	1.00[ASN][1000 genomes]
rs12340918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887682	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2225184	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3118749	0.82[ASN][1000 genomes]
rs3118750	1.00[ASN][1000 genomes]
rs3118751	1.00[ASN][1000 genomes]
rs3118752	1.00[ASN][1000 genomes]
rs3118757	1.00[ASN][1000 genomes]
rs3118758	1.00[ASN][1000 genomes]
rs3118759	1.00[ASN][1000 genomes]
rs3118760	1.00[ASN][1000 genomes]
rs3118764	1.00[ASN][1000 genomes]
rs3131905	0.82[ASN][1000 genomes]
rs3131906	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3131907	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3131908	1.00[ASN][1000 genomes]
rs3131909	1.00[ASN][1000 genomes]
rs34433105	1.00[ASN][1000 genomes]
rs73653452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97022000-97028600	Weak transcription	Small Intestine	intestine
2	chr9:97022200-97026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:97022200-97028400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:97022200-97028400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:97022200-97028600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:97022200-97031400	Weak transcription	Left Ventricle	heart
7	chr9:97022200-97031600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:97022200-97031600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:97022200-97031600	Weak transcription	HSMMtube	muscle
10	chr9:97022200-97033400	Weak transcription	Fetal Stomach	stomach
11	chr9:97022200-97040800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:97022200-97041800	Weak transcription	Fetal Lung	lung
13	chr9:97022200-97042600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
15	chr9:97022400-97025000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:97022400-97026400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:97022400-97026600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:97022400-97028600	Weak transcription	Fetal Intestine Large	intestine
19	chr9:97022400-97031400	Weak transcription	NHEK	skin
20	chr9:97022400-97036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:97022600-97026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:97022600-97026400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:97022600-97027800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:97022600-97028600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:97022600-97028800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:97022600-97029200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:97022600-97040600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:97022600-97055200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:97022800-97025400	Weak transcription	Fetal Thymus	thymus
30	chr9:97022800-97025800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr9:97022800-97028600	Weak transcription	Primary B cells from cord blood	blood
32	chr9:97022800-97029200	Weak transcription	HSMM	muscle
33	chr9:97022800-97031400	Weak transcription	Psoas Muscle	Psoas
34	chr9:97022800-97040800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:97022800-97040800	Weak transcription	Thymus	Thymus
36	chr9:97022800-97042400	Weak transcription	Brain Angular Gyrus	brain
37	chr9:97022800-97054600	Weak transcription	Pancreas	Pancrea
38	chr9:97023000-97025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:97023000-97025400	Weak transcription	K562	blood
40	chr9:97023000-97025600	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:97023000-97026000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:97023000-97026200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr9:97023000-97026200	Weak transcription	Dnd41	blood
44	chr9:97023000-97026200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr9:97023000-97026400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:97023000-97026600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:97023000-97026600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:97023000-97027800	Weak transcription	Stomach Mucosa	stomach
49	chr9:97023000-97028200	Weak transcription	HepG2	liver
50	chr9:97023000-97028400	Weak transcription	Rectal Mucosa Donor 31	rectum

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