Variant report

Variant	rs12337678
Chromosome Location	chr9:96626787-96626788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10739959	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs10761283	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10761284	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10761289	0.84[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10761290	0.87[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10821237	0.82[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10821238	0.87[JPT][hapmap];0.89[YRI][hapmap]
rs10821240	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992931	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12342315	0.81[AMR][1000 genomes]
rs4744286	0.82[CHB][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs72751421	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96623400-96626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96624400-96631400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:96625400-96627000	Enhancers	Fetal Brain Male	brain
4	chr9:96625600-96627000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:96625600-96627000	Enhancers	Brain Germinal Matrix	brain
6	chr9:96626000-96626800	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr9:96626000-96627400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:96626000-96627400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96626000-96627600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:96626000-96627800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:96626200-96627000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:96626200-96627000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr9:96626200-96627000	Enhancers	Fetal Kidney	kidney
14	chr9:96626200-96627000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr9:96626200-96627200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:96626400-96626800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:96626400-96626800	Enhancers	Fetal Brain Female	brain
18	chr9:96626600-96627200	Bivalent Enhancer	Fetal Stomach	stomach
19	chr9:96626600-96627600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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