Variant report

Variant	rs12339317
Chromosome Location	chr9:86188868-86188869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11507179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12350995	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58827784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86186200-86199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86187200-86189800	Weak transcription	Psoas Muscle	Psoas
3	chr9:86188000-86189400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:86188000-86189600	Weak transcription	GM12878-XiMat	blood
5	chr9:86188000-86215200	Weak transcription	Primary T cells from cord blood	blood
6	chr9:86188400-86200800	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links