Variant report

Variant	rs12339683
Chromosome Location	chr9:86214149-86214150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10113885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86188000-86215200	Weak transcription	Primary T cells from cord blood	blood
2	chr9:86198800-86217800	Weak transcription	Aorta	Aorta
3	chr9:86213000-86214600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:86213000-86214600	Enhancers	Fetal Intestine Large	intestine
5	chr9:86213000-86214800	Enhancers	HepG2	liver
6	chr9:86213200-86214200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:86213200-86214200	Enhancers	Liver	Liver
8	chr9:86213200-86214600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:86213200-86214600	Enhancers	Fetal Intestine Small	intestine
10	chr9:86213400-86214200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:86213400-86214200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:86213400-86214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:86213400-86214200	Enhancers	Adipose Nuclei	Adipose
14	chr9:86213400-86214400	Enhancers	Placenta	Placenta
15	chr9:86213600-86214200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr9:86213800-86214400	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links