Variant report

Variant	rs1233992
Chromosome Location	chr12:42387009-42387010
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1009723	0.84[EUR][1000 genomes]
rs1016659	0.84[EUR][1000 genomes]
rs1024700	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10431604	0.90[EUR][1000 genomes]
rs1069644	0.81[JPT][hapmap]
rs10748323	0.90[EUR][1000 genomes]
rs1226303	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs1233988	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233994	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233996	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1234032	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1234034	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1234037	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1234038	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1234040	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1234052	0.82[EUR][1000 genomes]
rs1234054	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1238290	0.81[JPT][hapmap]
rs12826710	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1463613	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs1628871	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1688874	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1732350	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1732351	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1732352	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1882139	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1994284	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6582378	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs712106	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs712119	0.81[JPT][hapmap]
rs712120	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs7136038	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7303028	1.00[CEU][hapmap]
rs7305763	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7957081	0.84[EUR][1000 genomes]
rs7958455	0.91[EUR][1000 genomes]
rs7958582	0.93[EUR][1000 genomes]
rs7970115	0.87[JPT][hapmap]
rs824699	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs824716	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs824717	0.87[AMR][1000 genomes]
rs824718	0.87[AMR][1000 genomes]
rs824724	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs824734	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs824738	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs824741	0.81[JPT][hapmap]
rs844046	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs865420	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs917666	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42385800-42388400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:42386200-42387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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