Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1009723	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1016659	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10431604	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10748323	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10785320	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785321	0.81[ASN][1000 genomes]
rs1233988	0.85[EUR][1000 genomes]
rs1234032	0.92[EUR][1000 genomes]
rs1234033	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1234034	0.92[EUR][1000 genomes]
rs1234037	0.90[EUR][1000 genomes]
rs1234038	0.90[EUR][1000 genomes]
rs1234040	0.90[EUR][1000 genomes]
rs1234052	0.83[ASN][1000 genomes]
rs1234054	0.85[EUR][1000 genomes]
rs2012636	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091678	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7957081	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7958455	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7958582	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42354200-42357400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:42354400-42355800	Enhancers	Brain Hippocampus Middle	brain
3	chr12:42354400-42356400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:42354400-42356400	Enhancers	Brain Germinal Matrix	brain
5	chr12:42354800-42355800	Enhancers	Brain Cingulate Gyrus	brain
6	chr12:42355000-42356600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:42355200-42356400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:42355400-42361400	Weak transcription	Brain Anterior Caudate	brain
9	chr12:42355600-42356400	Enhancers	Fetal Intestine Large	intestine

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