Variant report

Variant	rs12341505
Chromosome Location	chr9:136710881-136710882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136706828..136709602-chr9:136710306..136713075,3	MCF-7	breast:
2	chr9:136706526..136708764-chr9:136709140..136712102,2	K562	blood:
3	chr9:136701985..136719064-chr9:136732605..136742545,35	MCF-7	breast:
4	chr9:136708649..136711470-chr9:136728033..136729956,2	MCF-7	breast:
5	chr9:136706526..136708477-chr9:136710602..136712874,2	K562	blood:
6	chr9:136708244..136711057-chr9:136719535..136721439,2	MCF-7	breast:
7	chr9:136698344..136701067-chr9:136709180..136711930,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10821526	0.98[ASN][1000 genomes]
rs10993820	0.88[ASN][1000 genomes]
rs10993822	0.88[ASN][1000 genomes]
rs10993823	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993824	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993826	0.88[ASN][1000 genomes]
rs10993828	0.88[ASN][1000 genomes]
rs10993829	0.88[ASN][1000 genomes]
rs10993830	0.88[ASN][1000 genomes]
rs10993832	0.88[ASN][1000 genomes]
rs12000549	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12005762	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12377799	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557679	0.98[ASN][1000 genomes]
rs17663678	0.88[ASN][1000 genomes]
rs2073929	0.88[ASN][1000 genomes]
rs2073930	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2156323	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2260095	0.86[ASN][1000 genomes]
rs2261150	0.98[ASN][1000 genomes]
rs2428123	0.98[ASN][1000 genomes]
rs2428124	0.88[ASN][1000 genomes]
rs2428126	0.98[ASN][1000 genomes]
rs2428129	0.98[ASN][1000 genomes]
rs2486350	0.98[ASN][1000 genomes]
rs2486351	0.98[ASN][1000 genomes]
rs2502765	0.98[ASN][1000 genomes]
rs2510254	0.98[ASN][1000 genomes]
rs28436700	0.98[ASN][1000 genomes]
rs35711919	0.88[ASN][1000 genomes]
rs35776936	0.88[ASN][1000 genomes]
rs3819500	0.88[ASN][1000 genomes]
rs3819502	0.98[ASN][1000 genomes]
rs3819503	0.96[ASN][1000 genomes]
rs3819504	0.88[ASN][1000 genomes]
rs3819505	0.88[ASN][1000 genomes]
rs55646136	0.88[ASN][1000 genomes]
rs55939286	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56745684	0.98[ASN][1000 genomes]
rs56868628	0.96[ASN][1000 genomes]
rs58816065	0.98[ASN][1000 genomes]
rs67484139	0.88[ASN][1000 genomes]
rs72762854	0.88[ASN][1000 genomes]
rs72762864	0.88[ASN][1000 genomes]
rs7853626	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
2	chr9:136698400-136718000	Weak transcription	Hela-S3	cervix
3	chr9:136705200-136711200	Genic enhancers	Fetal Intestine Small	intestine
4	chr9:136705400-136726800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:136705600-136711000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:136705600-136719200	Weak transcription	Fetal Kidney	kidney
7	chr9:136705800-136721000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:136705800-136724400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:136705800-136726000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:136705800-136729400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:136706000-136726400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:136706200-136712000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:136706400-136712400	Weak transcription	HepG2	liver
14	chr9:136706600-136714000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:136707200-136726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:136707600-136711800	Enhancers	Lung	lung
17	chr9:136708000-136713000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:136708000-136716800	Weak transcription	Stomach Mucosa	stomach
19	chr9:136708000-136719600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:136708000-136721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:136708200-136713600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:136708200-136719200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:136708400-136713800	Weak transcription	Fetal Brain Male	brain
24	chr9:136708600-136713600	Weak transcription	Fetal Brain Female	brain
25	chr9:136708600-136713800	Weak transcription	NHEK	skin
26	chr9:136708800-136711400	Enhancers	Liver	Liver
27	chr9:136708800-136711400	Enhancers	Fetal Lung	lung
28	chr9:136709000-136711000	Enhancers	Fetal Heart	heart
29	chr9:136709000-136711200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:136709000-136712000	Enhancers	Fetal Muscle Trunk	muscle
31	chr9:136709000-136715000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:136709000-136728600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:136709200-136711200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:136709200-136711200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr9:136709200-136714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:136709400-136711000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr9:136709400-136711000	Enhancers	Left Ventricle	heart
38	chr9:136709600-136711000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:136709600-136711400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr9:136709600-136711400	Enhancers	Fetal Stomach	stomach
41	chr9:136709600-136711400	Enhancers	HSMMtube	muscle
42	chr9:136709600-136712000	Enhancers	Right Ventricle	heart
43	chr9:136709600-136712200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:136709600-136715400	Weak transcription	Fetal Intestine Large	intestine
45	chr9:136709800-136711200	Genic enhancers	NHLF	lung
46	chr9:136709800-136711200	Enhancers	Osteobl	bone
47	chr9:136709800-136711400	Enhancers	Primary B cells from cord blood	blood
48	chr9:136709800-136711400	Enhancers	NH-A	brain
49	chr9:136709800-136711800	Enhancers	Primary B cells from peripheral blood	blood
50	chr9:136709800-136718000	Weak transcription	Brain Inferior Temporal Lobe	brain

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