Variant report

Variant	rs12343107
Chromosome Location	chr9:15747448-15747449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10115770	1.00[AMR][1000 genomes]
rs12347846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56109907	1.00[AMR][1000 genomes]
rs73644685	1.00[AMR][1000 genomes]
rs73644948	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:15737000-15754000	Weak transcription	Gastric	stomach
3	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
4	chr9:15744600-15747600	Weak transcription	Small Intestine	intestine
5	chr9:15745000-15749600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:15745200-15748400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:15745600-15748400	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:15746600-15748000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:15746600-15748400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:15746600-15748600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr9:15746600-15749200	Weak transcription	Primary T cells from cord blood	blood
12	chr9:15746800-15747600	Strong transcription	Brain Hippocampus Middle	brain
13	chr9:15746800-15747600	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr9:15746800-15747600	ZNF genes & repeats	Fetal Thymus	thymus
15	chr9:15746800-15748400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:15746800-15748600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr9:15747000-15747800	ZNF genes & repeats	Thymus	Thymus
18	chr9:15747200-15748000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:15747200-15748600	Weak transcription	Fetal Stomach	stomach
20	chr9:15747200-15748800	Weak transcription	Pancreas	Pancrea
21	chr9:15747200-15759600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:15747400-15748400	Weak transcription	Aorta	Aorta

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