Variant report

Variant	rs12343858
Chromosome Location	chr9:14853732-14853733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10114394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10116665	1.00[EUR][1000 genomes]
rs1021494	1.00[JPT][hapmap]
rs12351267	1.00[EUR][1000 genomes]
rs2818941	1.00[JPT][hapmap]
rs28413927	1.00[EUR][1000 genomes]
rs28433528	1.00[EUR][1000 genomes]
rs41313784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58241195	1.00[EUR][1000 genomes]
rs61576366	1.00[EUR][1000 genomes]
rs7848267	1.00[EUR][1000 genomes]
rs7858575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7868311	1.00[EUR][1000 genomes]
rs9298708	1.00[EUR][1000 genomes]
rs950739	1.00[CHB][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1031440	chr9:14805107-14859190	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv540072	chr9:14805107-14859190	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv892619	chr9:14821819-14866389	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3390567	chr9:14852461-14891880	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14801800-14857200	Strong transcription	HepG2	liver
2	chr9:14807400-14868600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:14833400-14860600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:14838600-14854000	Strong transcription	Fetal Kidney	kidney
5	chr9:14843400-14868800	Weak transcription	Pancreas	Pancrea
6	chr9:14849600-14869000	Weak transcription	Small Intestine	intestine
7	chr9:14850200-14857000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:14850200-14859000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:14850200-14869000	Weak transcription	Fetal Brain Male	brain
10	chr9:14851600-14863800	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:14851800-14857000	Weak transcription	Aorta	Aorta
12	chr9:14852200-14857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:14852600-14858600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:14852800-14857000	Weak transcription	Fetal Stomach	stomach
15	chr9:14853000-14857000	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:14853000-14857200	Weak transcription	Adipose Nuclei	Adipose
17	chr9:14853200-14857200	Weak transcription	Fetal Intestine Large	intestine
18	chr9:14853200-14868800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:14853400-14853800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr9:14853400-14857000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:14853400-14857000	Weak transcription	Fetal Lung	lung

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