Variant report

Variant	rs12344046
Chromosome Location	chr9:93849777-93849778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10991860	1.00[AMR][1000 genomes]
rs10991865	1.00[AMR][1000 genomes]
rs12341726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907148	0.97[ASN][1000 genomes]
rs60434357	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93846600-93850200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:93847600-93850000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr9:93847800-93855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:93848000-93849800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:93848200-93851600	Weak transcription	HepG2	liver
6	chr9:93848200-93852200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:93849000-93849800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:93849000-93849800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:93849000-93850000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:93849400-93849800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:93849600-93849800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:93849600-93849800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:93849600-93849800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:93849600-93850000	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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