Variant report

Variant	rs12344570
Chromosome Location	chr9:102591042-102591043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102589376..102591940-chr9:102594219..102596621,2	MCF-7	breast:
2	chr9:102584717..102589672-chr9:102590692..102593827,7	K562	blood:
3	chr9:102587323..102589570-chr9:102589778..102591826,2	MCF-7	breast:
4	chr9:102590542..102592344-chr9:102611716..102613330,2	K562	blood:

Variant related genes	Relation type
ENSG00000119508	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7034165	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3433859	chr9:102589981-102592279	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102586800-102609200	Weak transcription	Aorta	Aorta
2	chr9:102587000-102613800	Weak transcription	Hela-S3	cervix
3	chr9:102587400-102608200	Weak transcription	Psoas Muscle	Psoas
4	chr9:102588200-102591400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:102588200-102595400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:102589200-102591200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:102589200-102592600	Strong transcription	Left Ventricle	heart
8	chr9:102589800-102591200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:102589800-102592600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr9:102590000-102592600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:102590200-102591400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr9:102590200-102591400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:102590200-102591400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr9:102590200-102591400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr9:102590200-102591600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr9:102590200-102592200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:102590200-102592400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:102590200-102592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:102590200-102592600	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:102590400-102591400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:102590400-102591400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:102590400-102591400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr9:102590400-102591400	ZNF genes & repeats	Lung	lung
24	chr9:102590400-102591400	Enhancers	Spleen	Spleen
25	chr9:102590400-102591600	Strong transcription	NHLF	lung
26	chr9:102590400-102592000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:102590400-102609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:102590600-102591200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr9:102590600-102591200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:102590600-102591200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
31	chr9:102590600-102591400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:102590600-102591400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr9:102590600-102591400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr9:102590600-102591400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr9:102590600-102591400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr9:102590600-102591400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:102590600-102591400	Bivalent Enhancer	Primary B cells from cord blood	blood
38	chr9:102590600-102591400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:102590600-102591400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:102590600-102591400	Strong transcription	Right Ventricle	heart
41	chr9:102590600-102591400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
42	chr9:102590600-102591600	Bivalent Enhancer	Placenta	Placenta
43	chr9:102590600-102611200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:102590800-102591200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
45	chr9:102590800-102591200	Active TSS	Brain Angular Gyrus	brain
46	chr9:102590800-102591200	Bivalent/Poised TSS	Colonic Mucosa	Colon
47	chr9:102590800-102591200	Flanking Active TSS	Gastric	stomach
48	chr9:102590800-102591200	Flanking Active TSS	Ovary	ovary
49	chr9:102590800-102591400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:102590800-102591400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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