Variant report

Variant	rs12345131
Chromosome Location	chr9:94451998-94451999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1201035	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1201043	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387996	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3121163	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4743850	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73521455	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73521457	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs923769	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs923771	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94440600-94455200	Weak transcription	Fetal Heart	heart
2	chr9:94443600-94452400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:94444200-94453000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:94444200-94453200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:94444200-94461400	Weak transcription	Right Atrium	heart
6	chr9:94445400-94455800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:94445600-94456000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:94449000-94456000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:94450600-94457600	Weak transcription	Gastric	stomach
10	chr9:94451000-94455000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:94451600-94453000	Weak transcription	Fetal Stomach	stomach
12	chr9:94451600-94457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:94451800-94452000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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