Variant report

Variant	rs12350635
Chromosome Location	chr9:136574584-136574585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136566342..136568091-chr9:136574335..136575910,2	K562	blood:
2	chr9:136396895..136399641-chr9:136573286..136575991,2	K562	blood:
3	chr9:136530487..136533087-chr9:136574041..136576943,2	MCF-7	breast:
4	chr9:136573704..136576391-chr9:136578401..136581568,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123453	Chromatin interaction
ENSG00000197859	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10113974	1.00[AMR][1000 genomes]
rs10121093	1.00[AMR][1000 genomes]
rs10124430	1.00[AMR][1000 genomes]
rs10993773	1.00[AMR][1000 genomes]
rs129958	1.00[AMR][1000 genomes]
rs129959	1.00[AMR][1000 genomes]
rs35684137	1.00[AMR][1000 genomes]
rs7852702	1.00[AMR][1000 genomes]
rs7871679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv894107	chr9:136494566-136579589	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv894108	chr9:136507473-136617292	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1049434	chr9:136529766-136618314	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1793889	chr9:136533509-136581419	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1049281	chr9:136535471-136617805	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv894113	chr9:136538798-136586367	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv469907	chr9:136552263-136600201	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv8576	chr9:136566631-136579273	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv894115	chr9:136571089-136617292	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv519503	chr9:136572021-136581419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv894116	chr9:136572021-136608669	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv466621	chr9:136573412-136600201	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv615690	chr9:136573412-136600201	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136560800-136576400	Weak transcription	HepG2	liver
2	chr9:136564800-136575800	Strong transcription	Liver	Liver
3	chr9:136566800-136578200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:136568200-136576000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:136568200-136576000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:136568200-136577000	Weak transcription	Right Atrium	heart
7	chr9:136568200-136578400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:136568400-136575600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:136568400-136577400	Weak transcription	Lung	lung
10	chr9:136568600-136574800	Weak transcription	HSMM	muscle
11	chr9:136569200-136580800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:136569600-136578600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:136570000-136580200	Weak transcription	Spleen	Spleen
14	chr9:136570400-136578800	Weak transcription	Pancreas	Pancrea
15	chr9:136570800-136575800	Enhancers	Thymus	Thymus
16	chr9:136571400-136574800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr9:136571400-136581400	Enhancers	Fetal Thymus	thymus
18	chr9:136571600-136577200	Enhancers	Fetal Muscle Leg	muscle
19	chr9:136571800-136576600	Enhancers	Primary T cells from cord blood	blood
20	chr9:136571800-136576600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr9:136571800-136582600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr9:136572000-136575200	Enhancers	Fetal Brain Male	brain
23	chr9:136572000-136576600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr9:136572400-136576000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr9:136572600-136576000	Weak transcription	Ovary	ovary
26	chr9:136572800-136574800	Weak transcription	Brain Anterior Caudate	brain
27	chr9:136572800-136576000	Weak transcription	NH-A	brain
28	chr9:136572800-136577800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:136573000-136576000	Weak transcription	Osteobl	bone
30	chr9:136573200-136574800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:136573200-136576000	Weak transcription	NHDF-Ad	bronchial
32	chr9:136573200-136578400	Weak transcription	Fetal Intestine Small	intestine
33	chr9:136573200-136580000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:136573400-136574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:136573400-136575800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:136573400-136576000	Weak transcription	NHLF	lung
37	chr9:136573400-136576200	Weak transcription	Fetal Lung	lung
38	chr9:136573600-136574600	Weak transcription	Brain Germinal Matrix	brain
39	chr9:136573800-136575400	Enhancers	Primary B cells from cord blood	blood
40	chr9:136573800-136575600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr9:136574000-136575400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:136574000-136575400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr9:136574000-136575600	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr9:136574000-136575800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr9:136574200-136575200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:136574200-136575200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:136574200-136575400	Enhancers	Primary B cells from peripheral blood	blood
48	chr9:136574200-136575400	Enhancers	GM12878-XiMat	blood
49	chr9:136574200-136575600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:136574200-136576000	Enhancers	HSMMtube	muscle

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