Variant report

Variant	rs12351775
Chromosome Location	chr9:73255554-73255555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73254771..73255648-chr9:73616037..73617011,3	MCF-7	breast:
2	chr9:73254797..73256065-chr9:73864206..73865490,4	MCF-7	breast:
3	chr9:73255235..73255857-chr9:73864357..73865338,4	K562	blood:
4	chr9:73254860..73255817-chr9:73616449..73617497,4	MCF-7	breast:
5	chr9:73254932..73255761-chr9:73617955..73618780,2	MCF-7	breast:
6	chr9:73254957..73255757-chr9:73616404..73617314,2	K562	blood:
7	chr9:73254988..73255819-chr9:73539510..73540543,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10125964	0.85[EUR][1000 genomes]
rs12338416	0.85[EUR][1000 genomes]
rs12338417	0.85[EUR][1000 genomes]
rs12341748	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12347269	0.85[EUR][1000 genomes]
rs7873981	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73237600-73256000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73251200-73256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:73255000-73255600	Enhancers	Fetal Brain Female	brain
4	chr9:73255000-73256200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73255000-73256800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:73255200-73255600	Active TSS	Aorta	Aorta
7	chr9:73255400-73255600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:73255400-73255600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:73255400-73255600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:73255400-73255600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:73255400-73255600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:73255400-73255600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:73255400-73255600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:73255400-73255600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr9:73255400-73255600	Enhancers	Brain Anterior Caudate	brain
16	chr9:73255400-73255600	Enhancers	Brain Substantia Nigra	brain
17	chr9:73255400-73255600	Enhancers	Colon Smooth Muscle	Colon
18	chr9:73255400-73255600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:73255400-73255600	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:73255400-73255600	Enhancers	Fetal Muscle Leg	muscle
21	chr9:73255400-73255600	Enhancers	Fetal Stomach	stomach
22	chr9:73255400-73255600	Enhancers	Psoas Muscle	Psoas
23	chr9:73255400-73255600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:73255400-73255600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:73255400-73255600	Flanking Active TSS	NH-A	brain
26	chr9:73255400-73255600	Flanking Active TSS	NHDF-Ad	bronchial
27	chr9:73255400-73255600	Flanking Active TSS	Osteobl	bone
28	chr9:73255400-73255800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr9:73255400-73256000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:73255400-73256000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:73255400-73256200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr9:73255400-73256200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:73255400-73256200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr9:73255400-73256400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:73255400-73256600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr9:73255400-73256800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:73255400-73257000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr9:73255400-73257000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:73255400-73257200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:73255400-73257600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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