Variant report

Variant	rs12354108
Chromosome Location	chr1:160815123-160815124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11265494	1.00[AMR][1000 genomes]
rs11265495	0.87[AMR][1000 genomes]
rs12060017	1.00[AMR][1000 genomes]
rs12065420	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073515	1.00[AMR][1000 genomes]
rs12074019	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084061	0.87[AMR][1000 genomes]
rs12354107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832486	0.87[AMR][1000 genomes]
rs16832506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv946456	chr1:160812650-160824679	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160811400-160820200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:160811800-160824600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:160812400-160816600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:160812600-160816000	Weak transcription	Fetal Heart	heart
5	chr1:160812600-160816800	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:160812800-160816800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:160812800-160824200	Weak transcription	Thymus	Thymus
8	chr1:160813400-160815400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:160814200-160815400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:160814400-160815200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr1:160814400-160815400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr1:160814400-160815400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:160814800-160815200	Enhancers	Primary B cells from cord blood	blood
14	chr1:160814800-160820200	Weak transcription	Fetal Intestine Large	intestine
15	chr1:160815000-160815400	Enhancers	Primary T cells from cord blood	blood
16	chr1:160815000-160815400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:160815000-160816200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr1:160815000-160817800	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links