Variant report

Variant	rs12354183
Chromosome Location	chr1:160882381-160882382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11265505	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832484	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160880000-160884400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:160880600-160882600	Enhancers	Fetal Intestine Large	intestine
3	chr1:160880600-160884000	Enhancers	Fetal Intestine Small	intestine
4	chr1:160881000-160882800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:160881000-160882800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:160881200-160882600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:160881200-160882600	Enhancers	Ovary	ovary
8	chr1:160881600-160882400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:160881600-160882400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:160882000-160882400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:160882000-160883000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:160882000-160883200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:160882000-160883400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:160882000-160883800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links