Variant report

Variant	rs12354252
Chromosome Location	chr1:161237895-161237896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11265576	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12057795	1.00[AFR][1000 genomes]
rs12058006	1.00[AFR][1000 genomes]
rs12068890	1.00[YRI][hapmap]
rs12089630	1.00[AFR][1000 genomes]
rs12093961	1.00[YRI][hapmap]
rs7516630	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161235200-161238000	Enhancers	Fetal Stomach	stomach
2	chr1:161236600-161238000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:161236600-161238200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:161236800-161238000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:161237000-161238000	Enhancers	GM12878-XiMat	blood
6	chr1:161237000-161238200	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:161237000-161238800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:161237200-161238200	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:161237200-161238200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:161237200-161238800	Enhancers	Placenta	Placenta
11	chr1:161237400-161242800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:161237400-161242800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:161237400-161250600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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