Variant report

Variant	rs12356268
Chromosome Location	chr10:38247886-38247887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38246641..38248987-chr10:38255413..38257422,2	MCF-7	breast:
2	chr10:38146605..38148407-chr10:38246117..38248023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198105	Chromatin interaction
ENSG00000236514	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11011382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11011413	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11011433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597286	0.80[CEU][hapmap]
rs12355396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12356594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35867298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38236800-38249000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:38238000-38248600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:38238400-38253000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:38238800-38248600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:38239000-38249400	Strong transcription	Fetal Muscle Trunk	muscle
6	chr10:38239200-38248000	Strong transcription	Adipose Nuclei	Adipose
7	chr10:38239400-38248200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:38239600-38264400	Weak transcription	Fetal Heart	heart
9	chr10:38239600-38264600	Weak transcription	Stomach Mucosa	stomach
10	chr10:38240400-38249200	Strong transcription	Ovary	ovary
11	chr10:38240600-38248200	Strong transcription	Fetal Muscle Leg	muscle
12	chr10:38240800-38264000	Weak transcription	NHLF	lung
13	chr10:38241000-38248200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:38241200-38249600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:38241800-38249000	Weak transcription	Small Intestine	intestine
16	chr10:38241800-38264400	Weak transcription	NHEK	skin
17	chr10:38242000-38248400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr10:38242200-38253600	Weak transcription	Esophagus	oesophagus
19	chr10:38242200-38253800	Weak transcription	Pancreas	Pancrea
20	chr10:38242400-38248200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:38242400-38248800	Strong transcription	Fetal Brain Female	brain
22	chr10:38242400-38253400	Weak transcription	Spleen	Spleen
23	chr10:38242400-38253600	Weak transcription	Gastric	stomach
24	chr10:38242600-38248600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr10:38242600-38264400	Weak transcription	HUVEC	blood vessel
26	chr10:38243000-38253600	Weak transcription	Right Ventricle	heart
27	chr10:38243200-38248600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:38243400-38248600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:38243400-38252800	Weak transcription	Dnd41	blood
30	chr10:38243400-38253800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:38243600-38248400	Strong transcription	Primary T cells from cord blood	blood
32	chr10:38243600-38249600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:38243600-38253200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:38243600-38256000	Weak transcription	HSMMtube	muscle
35	chr10:38244000-38253800	Weak transcription	Aorta	Aorta
36	chr10:38244200-38248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:38244200-38253400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:38244400-38253000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:38244600-38248400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:38245200-38248600	Weak transcription	Fetal Stomach	stomach
41	chr10:38245200-38253600	Weak transcription	NH-A	brain
42	chr10:38245200-38253800	Weak transcription	Fetal Intestine Large	intestine
43	chr10:38245400-38249200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:38245400-38253200	Weak transcription	Fetal Brain Male	brain
45	chr10:38245400-38253400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:38245600-38248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:38245800-38249200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:38245800-38253600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:38245800-38256000	Weak transcription	Osteobl	bone
50	chr10:38246000-38251000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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