Variant report

Variant	rs12357474
Chromosome Location	chr10:19208896-19208897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10826807	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10826808	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10826809	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11007660	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11007661	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11007674	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11007884	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11007917	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11007920	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11008082	0.82[EUR][1000 genomes]
rs11008093	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11008133	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11008149	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11008173	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12357490	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12358497	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12358506	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1339052	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1361291	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1361295	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2211101	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2813780	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3951271	0.88[EUR][1000 genomes]
rs72785281	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72785283	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7913808	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550123	chr10:19090812-19228730	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550124	chr10:19205103-19307536	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19206800-19209400	Weak transcription	Small Intestine	intestine

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