Variant report

Variant	rs12359875
Chromosome Location	chr10:6051107-6051108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6045037..6047969-chr10:6050387..6052684,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11256311	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12722606	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476491	1.00[CHB][hapmap]
rs35612087	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35869582	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36059985	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36062381	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294617	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4749894	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4749924	0.82[ASW][hapmap];0.84[AFR][1000 genomes]
rs6602398	0.82[ASW][hapmap];0.84[AFR][1000 genomes]
rs7898880	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9663421	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6048400-6055800	Weak transcription	K562	blood
4	chr10:6049600-6053000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6050000-6054200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:6050000-6056000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:6050600-6051200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:6050600-6051200	Active TSS	Adipose Nuclei	Adipose
9	chr10:6050600-6051200	Active TSS	Ovary	ovary
10	chr10:6050600-6051200	Active TSS	Right Atrium	heart
11	chr10:6050600-6051200	Active TSS	NHLF	lung
12	chr10:6050600-6051400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:6050600-6051400	Active TSS	Fetal Lung	lung
14	chr10:6050800-6051200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:6050800-6051200	Active TSS	HSMMtube	muscle
16	chr10:6051000-6051200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:6051000-6051200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:6051000-6051200	Enhancers	Stomach Mucosa	stomach
19	chr10:6051000-6051200	Flanking Active TSS	Osteobl	bone
20	chr10:6051000-6051400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:6051000-6051400	Enhancers	NHEK	skin
22	chr10:6051000-6051600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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