Variant report

Variant	rs12360055
Chromosome Location	chr10:98924818-98924819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11595198	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv7506	chr10:98902440-98940209	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98922600-98925000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr10:98922600-98925400	Genic enhancers	Brain Germinal Matrix	brain
3	chr10:98922600-98925800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:98922800-98925600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:98923000-98925400	Enhancers	Fetal Brain Female	brain
6	chr10:98923400-98928600	Enhancers	Fetal Lung	lung
7	chr10:98923400-98939200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:98924200-98925000	Weak transcription	Thymus	Thymus
9	chr10:98924200-98925800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:98924200-98929000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:98924200-98930000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:98924200-98930800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:98924400-98925600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:98924400-98926800	Weak transcription	Fetal Brain Male	brain
15	chr10:98924400-98928600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:98924600-98925600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:98924600-98926400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:98924800-98928200	Enhancers	Fetal Thymus	thymus
19	chr10:98924800-98935600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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