Variant report

Variant	rs12360732
Chromosome Location	chr11:71659783-71659784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71650447..71653924-chr11:71657560..71661211,3	K562	blood:
2	chr11:71641032..71643202-chr11:71658397..71660024,2	MCF-7	breast:
3	chr11:71639007..71647132-chr11:71654924..71662463,14	MCF-7	breast:
4	chr11:71655022..71660498-chr11:71666064..71670761,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255296	Chromatin interaction
ENSG00000254469	Chromatin interaction
ENSG00000137522	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs511762	1.00[MKK][hapmap]
rs5743675	0.96[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71641000-71671000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:71641200-71670800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:71641200-71671400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:71641400-71661600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:71641400-71670800	Weak transcription	Esophagus	oesophagus
6	chr11:71641400-71671000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:71641400-71671000	Weak transcription	Fetal Thymus	thymus
8	chr11:71641400-71671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:71641600-71670800	Weak transcription	Spleen	Spleen
10	chr11:71641600-71671400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:71641600-71671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:71641600-71671600	Weak transcription	Brain Germinal Matrix	brain
13	chr11:71641600-71671600	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:71641600-71673400	Weak transcription	NHLF	lung
15	chr11:71641800-71671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:71642400-71671000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:71642400-71671000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:71642600-71671000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:71642600-71671200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:71642800-71671200	Weak transcription	Dnd41	blood
21	chr11:71642800-71671400	Weak transcription	Fetal Brain Female	brain
22	chr11:71644200-71665600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:71645600-71671200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:71645800-71660200	Weak transcription	Thymus	Thymus
25	chr11:71645800-71660800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:71645800-71671400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:71648800-71671600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:71649000-71662600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:71649200-71662400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:71649200-71666400	Weak transcription	Primary B cells from cord blood	blood
31	chr11:71649200-71670800	Weak transcription	Fetal Stomach	stomach
32	chr11:71649200-71671000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:71649400-71662400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:71649400-71667400	Weak transcription	Primary T cells from cord blood	blood
35	chr11:71651000-71670800	Weak transcription	Placenta	Placenta
36	chr11:71651400-71660000	Enhancers	HSMMtube	muscle
37	chr11:71652000-71660200	Enhancers	HUVEC	blood vessel
38	chr11:71652000-71671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:71652200-71671200	Weak transcription	Aorta	Aorta
40	chr11:71654200-71660200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr11:71654200-71671200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:71654400-71660000	Enhancers	NH-A	brain
43	chr11:71654400-71660000	Enhancers	Osteobl	bone
44	chr11:71654600-71662600	Weak transcription	Brain Angular Gyrus	brain
45	chr11:71655400-71659800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:71655400-71660000	Enhancers	HSMM	muscle
47	chr11:71656000-71670800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:71656800-71668200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:71657000-71660600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:71657000-71670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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