Variant report

Variant	rs12361737
Chromosome Location	chr11:105387116-105387117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105386392..105390271-chr11:105390610..105394046,5	K562	blood:
2	chr11:105385673..105387781-chr11:105388066..105390476,3	K562	blood:
3	chr11:105385111..105387374-chr11:105388976..105390591,2	K562	blood:
4	chr11:105384754..105389238-chr11:105390610..105395129,6	K562	blood:
5	chr11:105386174..105388454-chr11:105417790..105420775,3	K562	blood:
6	chr11:105371540..105374049-chr11:105386860..105389341,2	K562	blood:
7	chr11:105371540..105374603-chr11:105385340..105388360,3	K562	blood:
8	chr11:105352067..105353901-chr11:105385410..105387990,2	K562	blood:
9	chr11:105380496..105383732-chr11:105384771..105387994,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10791760	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895815	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226732	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11226746	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226749	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12223737	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12785540	0.84[ASN][1000 genomes]
rs1945976	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1945983	0.84[ASN][1000 genomes]
rs2032411	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6591129	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108291	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7116118	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105385200-105387800	Active TSS	K562	blood
2	chr11:105386000-105387200	Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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