Variant report

Variant	rs12361883
Chromosome Location	chr11:76342150-76342151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76337563..76340451-chr11:76340690..76342431,2	MCF-7	breast:
2	chr11:76340695..76342545-chr8:146016002..146018963,2	MCF-7	breast:
3	chr11:76338138..76339963-chr11:76341531..76343151,2	K562	blood:

Variant related genes	Relation type
ENSG00000255479	Chromatin interaction
ENSG00000161016	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10899241	0.91[ASN][1000 genomes]
rs10899244	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899245	0.83[ASN][1000 genomes]
rs11236817	0.93[ASN][1000 genomes]
rs11236821	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236822	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236823	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11600548	0.95[ASN][1000 genomes]
rs57077897	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61893486	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76337200-76342200	Enhancers	Primary B cells from cord blood	blood
2	chr11:76337600-76342600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:76337800-76342200	Enhancers	Placenta	Placenta
4	chr11:76339400-76342600	Enhancers	Left Ventricle	heart
5	chr11:76339600-76342600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:76339800-76342600	Enhancers	Fetal Stomach	stomach
7	chr11:76339800-76342800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:76340000-76343800	Enhancers	HUVEC	blood vessel
9	chr11:76340200-76342400	Enhancers	NHDF-Ad	bronchial
10	chr11:76340400-76342400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76341400-76342600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:76341600-76342600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:76341600-76346200	Weak transcription	Right Atrium	heart
14	chr11:76341600-76346400	Weak transcription	Lung	lung
15	chr11:76341600-76346400	Weak transcription	Right Ventricle	heart
16	chr11:76341600-76347200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:76341600-76353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:76341800-76342200	Enhancers	Colon Smooth Muscle	Colon
19	chr11:76341800-76342200	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:76341800-76342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:76341800-76342800	Enhancers	Adipose Nuclei	Adipose
22	chr11:76341800-76346800	Weak transcription	Spleen	Spleen
23	chr11:76342000-76342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:76342000-76346000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:76342000-76346200	Weak transcription	Colonic Mucosa	Colon
26	chr11:76342000-76346600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:76342000-76347000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:76342000-76347400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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