Variant report

Variant	rs12362262
Chromosome Location	chr11:119951702-119951703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11217682	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12276260	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12276427	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12365185	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7102643	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7949366	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3496913	chr11:119950157-119954996	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	esv3496914	chr11:119950157-119954996	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv11932	chr11:119950867-119956926	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv821369	chr11:119950867-119956926	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1792150	chr11:119951539-119956750	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119950200-119951800	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:119950400-119956400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:119950800-119954600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:119950800-119956400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:119951200-119956400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:119951600-119953200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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