Variant report
| Variant | rs12364600 |
|---|---|
| Chromosome Location | chr11:24589239-24589240 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10734353 | 0.82[EUR][1000 genomes] |
| rs11027992 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11027993 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11027994 | 0.86[EUR][1000 genomes] |
| rs11027996 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11028001 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11028029 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11028040 | 0.85[AMR][1000 genomes] |
| rs11028043 | 0.84[AMR][1000 genomes] |
| rs12366003 | 0.84[AMR][1000 genomes] |
| rs12800717 | 0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1396846 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17234826 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1912135 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2896707 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2896708 | 0.84[AMR][1000 genomes] |
| rs34355204 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4439509 | 0.84[AMR][1000 genomes] |
| rs61875612 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7124669 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7946389 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs906883 | 0.87[AMR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1055026 | chr11:24151133-24737122 | Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037744 | chr11:24174588-24737122 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv553820 | chr11:24583891-24633951 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv274904 | chr11:24585616-24589239 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3346569 | chr11:24587201-24589649 | Enhancers | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12364600 | METT5D1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:24589200-24589600 | Enhancers | HUVEC | blood vessel |
