Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10766243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832406	0.83[ASN][1000 genomes]
rs10832407	0.83[ASN][1000 genomes]
rs10832410	0.84[ASN][1000 genomes]
rs10832411	0.84[ASN][1000 genomes]
rs10832416	0.91[ASN][1000 genomes]
rs11023532	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023534	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023550	0.84[ASN][1000 genomes]
rs11023551	0.84[ASN][1000 genomes]
rs11023552	0.91[ASN][1000 genomes]
rs12222004	0.83[ASN][1000 genomes]
rs3925090	0.84[ASN][1000 genomes]
rs4641450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757309	0.81[ASN][1000 genomes]
rs4757311	0.84[ASN][1000 genomes]
rs57784160	0.83[ASN][1000 genomes]
rs6486241	0.83[ASN][1000 genomes]
rs7111011	0.84[ASN][1000 genomes]
rs7114823	0.84[ASN][1000 genomes]
rs7122143	0.84[ASN][1000 genomes]
rs7130361	0.84[ASN][1000 genomes]
rs7942633	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12364769	PLEKHA7	cis	cerebellum	SCAN
rs12364769	DKFZp686O24166	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15401200-15401400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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