Variant report

Variant	rs12365369
Chromosome Location	chr11:64164833-64164834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11601738	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1320628	0.85[ASN][1000 genomes]
rs750832	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
2	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64154000-64167600	Weak transcription	Right Atrium	heart
2	chr11:64163800-64167400	Weak transcription	Spleen	Spleen
3	chr11:64163800-64168400	Weak transcription	Ovary	ovary
4	chr11:64164000-64165200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:64164000-64168000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:64164000-64169000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:64164000-64170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:64164200-64165400	Weak transcription	Fetal Thymus	thymus
9	chr11:64164200-64165600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:64164200-64167400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:64164200-64167400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:64164200-64167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:64164400-64165400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:64164400-64167400	Weak transcription	Placenta	Placenta
15	chr11:64164400-64167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:64164400-64167600	Weak transcription	HSMM	muscle
17	chr11:64164400-64171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:64164800-64165200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:64164800-64165200	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:64164800-64166200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links