Variant report

Variant	rs12366345
Chromosome Location	chr12:41970645-41970646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10444591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785270	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10785271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880100	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12367934	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2122794	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56311508	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7298003	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7301871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7309011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7961155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7973550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7974163	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41959400-41970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:41966200-41973000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:41966600-41973000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:41967000-41975600	Weak transcription	Aorta	Aorta
5	chr12:41967200-41972800	Weak transcription	Brain Hippocampus Middle	brain
6	chr12:41967400-41976600	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:41967600-41972400	Weak transcription	Fetal Stomach	stomach
8	chr12:41967600-41973200	Weak transcription	Brain Germinal Matrix	brain
9	chr12:41968400-41971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:41968400-41975400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr12:41968600-41971000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:41968600-41971600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:41968600-41972000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:41969200-41971600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr12:41969400-41971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:41969400-41971600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:41969400-41971600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:41969400-41971800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr12:41969400-41972000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr12:41969400-41973000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr12:41970200-41972800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:41970600-41971400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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