Variant report

Variant	rs12370522
Chromosome Location	chr12:59334071-59334072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10877188	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11172823	0.81[AMR][1000 genomes]
rs11172825	0.81[AMR][1000 genomes]
rs11172827	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11172831	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11172833	0.82[EUR][1000 genomes]
rs11172839	0.83[AMR][1000 genomes]
rs11172840	0.83[AMR][1000 genomes]
rs11172846	0.83[AMR][1000 genomes]
rs11172857	0.81[AMR][1000 genomes]
rs12423502	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12424788	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12426969	0.81[AMR][1000 genomes]
rs60522760	0.81[AMR][1000 genomes]
rs60984323	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61919461	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61919462	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61919464	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61919465	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61919466	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61919471	0.83[AMR][1000 genomes]
rs61919513	0.83[AMR][1000 genomes]
rs61919518	0.81[AMR][1000 genomes]
rs61919519	0.81[AMR][1000 genomes]
rs61919520	0.81[AMR][1000 genomes]
rs6581224	0.81[AMR][1000 genomes]
rs7136193	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7294684	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7297094	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7302365	0.83[AMR][1000 genomes]
rs7969722	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7970054	0.84[AMR][1000 genomes]
rs7980136	0.82[EUR][1000 genomes]
rs9645802	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043385	chr12:59149582-59758952	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1067596	chr12:59167152-59764208	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv492251	chr12:59167152-59764208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59328600-59337000	Weak transcription	Gastric	stomach
2	chr12:59330200-59335200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:59332200-59335200	Enhancers	HUVEC	blood vessel
4	chr12:59333800-59336400	Weak transcription	Stomach Mucosa	stomach
5	chr12:59334000-59335400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links